BioBase
Ebi   mirror   site

This anonymous FTP MIRROR site is provided by the Institute of Biochemistry and Biophysics PAS through Biocentrum Ochota Project.

Access to this mirror is freely available for all parties through the FTP protocol.


IBB PAS provides daily updates for biological databanks listed below:

Biomodels

BioModels Database serves as a reliable repository of computational models of biological processes. It hosts models described in peer-reviewed scientific literature and models generated automatically from pathway resources (Path2Models). A large number of models collected from literature are manually curated and semantically enriched with cross-references from external data resources. The resource allows scientific community to store, search and retrieve mathematical models of their interest. In addition, features such as generation of sub-models, online simulation, conversion of models into different representational formats, and programmatic access via web services, are provided.

InterPro

InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.

PDBe

PDBe is the European resource for the collection, organisation and dissemination of data on biological macromolecular structures. In collaboration with the other worldwide Protein Data Bank (wwPDB) partners - the Research Collaboratory for Structural Bioinformatics (RCSB) and BioMagResBank (BMRB) in the USA and the Protein Data Bank of Japan (PDBj) - we work to collate, maintain and provide access to the global repository of macromolecular structure data.

UniProtKB

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data.

Ensembl

Ensembl is a joint project between EMBL - EBI and the Wellcome Trust Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. The Ensembl project was started in 1999, with the aim of providing automated annotation of the human genome and making this publicly available via the web. Many more genomes have since been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data.

© IBB PAS 2022 - Mirror synchronised at: 2023-01-17 19:38:28

Strona współfinansowana jest ze środków Europejskiego Funduszu Rozwoju Regionalnego w ramach Programu Operacyjnego Innowacyjna Gospodarka, projekt: Biocentrum Ochota - infrastruktura informatyczna dla rozwoju strategicznych kierunków biologii i medycyny (nr : POIG.02.03.00-00-003/09